1. High-Throughput Biological Data Analysis (A Step Toward Understanding Cellular Regulation)
    Elvitigala, Thanura R.; Polpitiya, Ashoka D.; Wang, Wenxue; Stockel, Jana; Khandelwal, Abha; Quatrano, Ralph S.; Pakrasi, Himadri B.; Ghosh, Bijoy K
    IEEE Control Systems Magazine pp. 81-100, December 2010

  2. Global Proteomics Reveal an Atypical Strategy for C/N Assimilation By A Cyanobacterium Under Diverse Environmental Perturbations
    Wegener, Kimberly M.; Singh, Abhay K.; Jacobs, Jon M.; Elvitigala, Thanura; Welsh, Eric A.; Keren, Nir; Gritsenko, Marina A.; Ghosh, Bijoy K.; Camp II, David G.; Smith, Richard D.; Pakrasi, Himadri B.
    Submitted to Proc. National Academy of Sciences 2010

  3. Identification and Modeling of Genes with Diurnal Oscillations from Microarray Time Series Data
    Wang, W., Ghosh, B. K., and Pakrasi, H. B.
    IEEE/ACM Transactions on Computational Biology and Bioinformatics 2009

  4. A Systems Level Analysis of the Effects of Light Quality on the Metabolism of a Cyanobacterium
    Singh, A. K., Bhattacharyya-Pakrasi, M., Elvitigala, T., Ghosh, B., Aurora, R., and Pakrasi, H. B.
    Plant Physiology Vol. 151 pp. 1596-1608, 2009

  5. Effect of continuous light on diurnal rhythms in Cyanothece ATCC 51142
    Elvitigala, T., Stockel, J., Ghosh, B. K., and Pakrasi, H. B.
    BMC Genomics Vol. 10 No. 226, 2009

  6. Using Systems Biology to Simplify Complex Disease: Immune Cartography
    Polpitiya, A. D., McDunn, J. E., Burykin, A., Ghosh, B. K., Perren Cobb, J.
    Critical Care Medicinevol. 37(1), Supplement January 2009, pp S16-S21

  7. REMOTE PAPER Arabidopsis Transcriptome Reveals Control Circuits Regulating Redox Homeostasis and the Role of an AP2 transcription factor
    Khandelwal, A., Elvitigala, T.R., Ghosh, B.K. and Quatrano, R.S.
    Plant Physiology Vol. 148, pp. 2050-2058, October 2008

  8. The Genome of Cyanothece 51142, a Unicellular Diazotrophic Cyanobacterium Important in the Marine Nitrogen Cycle
    Eric A. Welsh, Michelle Liberton, Jana Stol, Thomas Loh, Thanura Elvitigala, Chunyan Wang, Aye Wollam, Robert S. Fulton, Sandra W. Clifton, Jon M. Jacobs, Rajeev Aurora, Bijoy K. Ghosh, Louis A. Sherman, Richard D. Smith, Richard K. Wilson and Himadri B. Pakrasi
    PNAS Vol. 105, No. 39, pp. 15094-15099, Sept 30, 2008

  9. REMOTE PAPER Integration of Carbon and Nitrogen Metabolism with Energy Production is Crucial to Light Acclimation in the Cyanobacterium Synechocystis
    Sing. A. K., Elvitigala., T., Parkasi., M. B., Aurora., R., Ghosh., B. K., Parkasi., H. B.
    Plant Physiology Vol. 148, No. 1, pp. 467-478, Sept 2008

  10. Plasticity of the Systemic Inflammatory Response to Acute Infection During Critical Illness: Development of the Riboleukogram
    McDunn., J. E., Husain., K. D., Polpitiya., A. D., Burykin., A., Ruan., J., Li., Q., Schierding., W., Lin., N., Dixon., D., Zhang., W., Coopersmith., C. M., Dunne., M., Colonna., M., Ghosh., B. K. Cobb., J. P.
    PLoS ONE vol. 3, no. 2, e1564, Feb. 2008, pp. 2-14.

  11. Genetic Regulatory Networks and Coregulation of Genes: A Dynamic Model Based Approach
    Polpitiya., A. D., Cobb., J. P., Ghosh., B. K., Proceedings of the New Directions in Control and Applications, Lecture Notes in Control and Information Sciences 321, W. P. Dayawansa, Y. Zhou and A. Lindquist
    Springer Verlag 2005, pp. 291-304